UBDS^3 2025

Program

UBDS^3 2025 season syllabus is here.

Schedule

For an up to date schedule of UBDS^3 2025 please use this link

Schedule 2025 - public

Course & project topics

Statistics with R

- Importing data in R, data types and data wrangling
- Visualization, grammar of graphics, ggplot2
- PCA
- Regression
- Testing (ANOVA, t-test)
- Clustering
- Tidy data
- R-Python interoperability

Machine Learning with python

- Basic python toolkit: pandas, numpy, matplotlib, seaborn
- Data manipulation and preprocessing (Dealing with outliers, encoding features, scaling data)
- Linear and non-linear models, Regression and classification
- Metrics
- Advanced ML and DNN (keras, torch, tf, building NN)

Biological topics

Please see the faculty expertise areas below and project topics in the syllabus.

Instructors and lecturers

Wolfgang Huber

European Molecular Biology Laboratory, Germany

#statistics

Guillem Guigo

Universitat de Girona, Spain

#machine learning

Fyodor Kondrashov

Okinawa Institute of Science and Technology, Japan

#genomics #evolution

Aleksandra Pękowska

Nencki Institute of Experimental Biology PAS, Poland

#genomics #stem cells #regulatory networks

Helena Crowell

University of Zurich, Switzerland

#single-cell RNA-seq

Ian Kouzel

Systems Biology & Biomedical Data Science Laboratory, University of Konstanz, Germany

#gene regulation

Michael Love

Biostatistics & Genetics, UNC-Chapel Hill, USA

#genomics #statistics

Oleh Prylutskyi

Falz-Fein Biosphere Reserve “Askania Nova”, Ukraine

#spatial ecology

Volodymyr Shvadchak

Vasyl Stefanyk Precarpathian National University, Ukraine

#biochemistry #cell biology

Roderic Guigo

Centre for Genomic Regulation, Spain

#genomics #bioinformatics #statistics

Lada Isakova

Okinawa Institute of Science and Technology, Japan

#genomics #evolution

Daryna Zavadska

Institut de Biologia Evolutiva - CSIC UPF, Spain

#protistology

Kateryna Pantiukh

University of Tartu, Estonia

#metagenomics

Borys Olifirov

Bohomoletz Institute of Physiology, Ukraine

#neurophysiology #imaging

Oleh Mezhenskyi

Bogomoletz Institute of Physiology, Department of neuromuscular physiology, Ukraine

#machine learning

Roderic Guigo I Corominas

Deparment of Mathematics, Harvard Univeristy, USA

#mathematics

Joao Henrique Diniz Brandao Gervasio

Okinawa Institute of Science and Technology, Japan

#evolution #immunology

Florian Pflug

Okinawa Institute of Science and Technology, Japan

#evolution #modeling #epidemiology

Bohdana Hurieva

Weizmann Institute of Science, Israel

#systems biology #structural biology #evolution

Iryna Poplevichiva

Max Planck Institute of Biochemistry, Germany

#structural biology

Leonid Shevchenko

LLO Ingeneko, Ukraine

#molecular biology #biochemistry

Anastasiia Horlova

European Molecular Biology Laboratory, Germany

#gene networks

Illia Savchenko

Quantum Machine Learning Engineer, Kyiv Academic University, Ukraine

#molecular dynamics

Tetiana Holdanova

Preste

#molecular dynamics

Lawrence Rudy Cadena

Heinrich-Heine-Universität Düsseldorf, Germany

#protistology

Olha Sur

Okinawa Institute of Science and Technology, Japan

#protistology

Metody Hollender

Institute of Evolutionary Biology, Poland

#protistology

Max Ticó

Centre for Genomic Regulation, Spain

#genomics #bioinformatics #statistics

Daryna Yakymenko

Jagiellonian University, Poland

#image analysis #cell biophysics

Iseult Leahy

Centre for Genomic Regulation, Spain

#genomics #bioinformatics #statistics

Matthias Meyer-Bender

European Molecular Biology Laboratory, Germany

#image analysis #proteomics

Julia Ruehle

Centre for Genomic Regulation, Spain

#single-cell data analysis

Luisa Santus

Centre for Genomic Regulation, Spain

#microbiology #bioinformatics

Helene Tonnele

Centre for Genomic Regulation, Spain

#microbiology #bioinformatics

Olena Solianyk

Lyceum “Maibutni”, Ukraine

#biochemistry #pharmacology

Leonid Shevchenko

LLO Ingeneko, Ukraine

#molecular biology #biochemistry

Teaching assistants

Anastasiia Alekseienko

University of Tartu, Estonia

Vlad Berezovskyi

Ivan Blashchak

Bohomoletz Institute of Physiology, Ukraine

Daria Borovyk

Institute of Biology (Freie Universität Berlin), Germany

Anastasiia Boshtova

Yehor Chudovskyi

Yuliia Chyzhyk

Roman Dzhikirba

Valeriia Kantsypa

Kosha Katsai

Oles Honchar Dnipro National University, Dnipro

Sviat Kharuk

Vasyl Stefanyk Precarpathian National University, Ukraine

EMBL, Germany

Vasyl Lukashchuk

Roman Lysenko

Schmalhausen Institute of Zoology, Ukraine

Vladyslav Ostash

National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”, Ukraine

Artem Popov

Nazar Shevchuk

Oleksii Stroganov

Oleksandr Zhadovets

find photos from UBDS^3 2025 here!

Sponsors and partners 2025

The UBDS^3 school is organized by:

Uzhhorod National University
School of Molecular and Theoretical Biology, a United States of America charitable 501c3 school.

We are supported by:

Educational partners:

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